VAT and Intrastat for online sellers: what to consider when using warehouses in the Czech Republic and Slovakia

Simple VAT & Intrastat compliance for e-commerce in the Czech Republic and Slovakia

We support online sellers with simple, safe and compliant VAT and Intrastat handling for cross-border sales connected with the Czech Republic and Slovakia.
Obligations can arise not only when you sell goods to customers in these countries, but also when you store goods in warehouses located in the Czech Republic or Slovakia (for example as part of marketplace fulfilment programmes).

We work directly with data from marketplaces, your e-shop and logistics providers and prepare your VAT and Intrastat reports for you, so you can spend your time growing your business – not struggling with local tax rules.

VAT and OSS registration

We will analyse your business model (sales flows, use of local warehouses, marketplaces) and choose the most suitable form of VAT settlement. We register your company for VAT or VAT-OSS in the Czech Republic or Slovakia whenever required by local rules, including situations where you only store goods in Czech or Slovak warehouses and ship them to customers in other EU countries.

We take responsibility for managing a secure and correct registration process with the tax authorities, so you can focus on scaling your business without administrative worries.

Filing your VAT returns

We ensure the accuracy and timeliness of your Czech and Slovak VAT and VAT-OSS returns.

You can rely on:

• correctly processed data from marketplaces, your e-shop and warehouse movements,
• accurate VAT calculations in line with Czech and Slovak legislation,
• VAT returns submitted on time for each filing period.

Intrastat registration and reporting

Using warehouses in the Czech Republic or Slovakia or shipping goods across EU borders can trigger Intrastat reporting obligations, even if you have no local Czech or Slovak customers.

We:

• check whether and when your business exceeds Intrastat thresholds,
• register you for Intrastat in the Czech Republic and/or Slovakia,
• prepare and submit Intrastat declarations based on your sales and logistics data,
• align Intrastat reporting with your VAT treatment and actual goods flows.

This helps ensure that both your tax and statistics obligations are consistently fulfilled.

Avoid late filings and penalties

By working with us, you stay in control of all your VAT and Intrastat deadlines. We monitor due dates, prepare the necessary returns and reports and help you avoid the risk of penalties for late or incorrect filings.

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